📑 Interpretable deep learning in single-cell omics
🗓Publish year: 2024
🧑💻Authors: Manoj M Wagle, Siqu Long, Carissa Chen, ...
🏢University: The University of Sydney, Australia
📎 Study the paper
📲Channel: @Bioinformatics
#review #deep_learning #single_cell
🗓Publish year: 2024
🧑💻Authors: Manoj M Wagle, Siqu Long, Carissa Chen, ...
🏢University: The University of Sydney, Australia
📎 Study the paper
📲Channel: @Bioinformatics
#review #deep_learning #single_cell
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Forwarded from Network Analysis Resources & Updates
📃Network Learning for Biomarker Discovery
🗓 Publish year: 2023
📘Journal: International Journal of Network Dynamics and Intelligence (IJNDI)
🧑💻Authors: Yulian Ding, Minghan Fu, Ping Luo, Fang-Xiang Wu
🏢Universities: University of Saskatchewan, S7N 5A9, Saskatoon, Canada,
University Health Network, Toronto, ON M5G 1L7, Canada,
University of Saskatchewan, S7N 5A9, Saskatoon, Canada
📎 Study paper
📱Channel: @ComplexNetworkAnalysis
#paper #Network #Learning #Biomarker #Discovery
🗓 Publish year: 2023
📘Journal: International Journal of Network Dynamics and Intelligence (IJNDI)
🧑💻Authors: Yulian Ding, Minghan Fu, Ping Luo, Fang-Xiang Wu
🏢Universities: University of Saskatchewan, S7N 5A9, Saskatoon, Canada,
University Health Network, Toronto, ON M5G 1L7, Canada,
University of Saskatchewan, S7N 5A9, Saskatoon, Canada
📎 Study paper
📱Channel: @ComplexNetworkAnalysis
#paper #Network #Learning #Biomarker #Discovery
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📚 8 Bioinformatics Projects for Students: Ultimate Step by Step Guide
🌐 Study
📲Channel: @Bioinformatics
#technical #project
🌐 Study
📲Channel: @Bioinformatics
#technical #project
Data Science For Bio
8 Bioinformatics Projects for Students in 2025: Innovative Ideas and Step-by-Step Guides - Data Science For Bio
Here are 8 detailed bioinformatics projects for students, complete with step-by-step instructions and resources.
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📄 A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-Seq, and Single-Cell RNA-Seq
📕Journal: Genomics, Proteomics & Bioinformatics (GPB) (I.F.=9.5)
🗓Publish year: 2022
🧑💻Authors: Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu
🏢University: Soochow University - Xiamen University, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #Polyadenylation #RNA_Seq #Single_Cell
📕Journal: Genomics, Proteomics & Bioinformatics (GPB) (I.F.=9.5)
🗓Publish year: 2022
🧑💻Authors: Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu
🏢University: Soochow University - Xiamen University, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #Polyadenylation #RNA_Seq #Single_Cell
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📦 3 Days recorded workshop on from UCLA
💥 RNA-seq I Analysis
▫️Part 1
▫️Part 2
▫️Part 3
📲Channel: @Bioinformatics
#video #rna_seq
💥 RNA-seq I Analysis
▫️Part 1
▫️Part 2
▫️Part 3
📲Channel: @Bioinformatics
#video #rna_seq
YouTube
W5a: RNA-seq I Analysis - Day 1
RNA-seq I aims to provide an introduction and the basics tools to process raw RNA-seq data on a cluster machine (Hoffman2). The workshop can serve also as a starting point to develop a gene expression project. This workshop is divided in three days that will…
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📃 Advancing genome editing with artificial intelligence: opportunities, challenges, and future directions
📓 Journal: Frontiers in Bioengineering and Biotechnology (I.F.=5.7)
🗓Publish year: 2024
🧑💻Authors: Shriniket Dixit, Anant Kumar, Kathiravan Srinivasan, ...
🏢University: Vellore Institute of Technology, India
📎 Study the paper
📲Channel: @Bioinformatics
#review #genome_editing #crisper
📓 Journal: Frontiers in Bioengineering and Biotechnology (I.F.=5.7)
🗓Publish year: 2024
🧑💻Authors: Shriniket Dixit, Anant Kumar, Kathiravan Srinivasan, ...
🏢University: Vellore Institute of Technology, India
📎 Study the paper
📲Channel: @Bioinformatics
#review #genome_editing #crisper
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📑 The Use of Artificial Intelligence in Writing Scientific Review Articles
📔 Journal: Current Osteoporosis Reports (I.F.=4.3)
🗓Publish year: 2024
🧑💻Authors: Melissa A. Kacena, Lilian I. Plotkin & Jill C. Fehrenbacher
🏢University: Indiana University School of Medicine, USA
📎 Study the paper
📲Channel: @Bioinformatics
#chatgpt #ai #writing
📔 Journal: Current Osteoporosis Reports (I.F.=4.3)
🗓Publish year: 2024
🧑💻Authors: Melissa A. Kacena, Lilian I. Plotkin & Jill C. Fehrenbacher
🏢University: Indiana University School of Medicine, USA
📎 Study the paper
📲Channel: @Bioinformatics
#chatgpt #ai #writing
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📄 On the Responsible Use of Chatbots in Bioinformatics
📗 Journal: Genomics, Proteomics & Bioinformatics (GPB) (I.F.=9.5)
🗓Publish year: 2024
🧑💻Authors: Gangqing Hu, Li Liu, Dong Xu
🏢University: West Virginia University, Arizona State University, University of Missouri, USA
📎 Study the paper
📲Channel: @Bioinformatics
#chatgpt #chatbot
📗 Journal: Genomics, Proteomics & Bioinformatics (GPB) (I.F.=9.5)
🗓Publish year: 2024
🧑💻Authors: Gangqing Hu, Li Liu, Dong Xu
🏢University: West Virginia University, Arizona State University, University of Missouri, USA
📎 Study the paper
📲Channel: @Bioinformatics
#chatgpt #chatbot
OUP Academic
On the Responsible Use of Chatbots in Bioinformatics
Large language model (LLM)-based chatbots like Chat Generative Pre-trained Transformer (ChatGPT), equipped with broad biological knowledge [1], have demons
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📃 Cancer driver mutations: predictions and reality
📘 Journal: Trends in Molecular Medicine (I.F.=13.6)
🗓Publish year: 2023
🧑💻Authors: Daria Ostroverkhova, Teresa M. Przytycka, Anna R. Panchenko
🏢University: Queen's University, Canada - National Institutes of Health (NIH), USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #cancer #mutation #driver
📘 Journal: Trends in Molecular Medicine (I.F.=13.6)
🗓Publish year: 2023
🧑💻Authors: Daria Ostroverkhova, Teresa M. Przytycka, Anna R. Panchenko
🏢University: Queen's University, Canada - National Institutes of Health (NIH), USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #cancer #mutation #driver
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📄A systematic review of biologically-informed deep learning models for cancer: fundamental trends for encoding and interpreting oncology data
📕 Journal: BMC Bioinformatics (I.F.=3)
🗓Publish year: 2023
🧑💻Authors: Magdalena Wysocka, Oskar Wysocki, Marie Zufferey, ...
🏢University: University of Manchester, UK - National University of Sciences, Switzerland
📎 Study the paper
📲Channel: @Bioinformatics
#review #cancer #deep_learning
📕 Journal: BMC Bioinformatics (I.F.=3)
🗓Publish year: 2023
🧑💻Authors: Magdalena Wysocka, Oskar Wysocki, Marie Zufferey, ...
🏢University: University of Manchester, UK - National University of Sciences, Switzerland
📎 Study the paper
📲Channel: @Bioinformatics
#review #cancer #deep_learning
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🔊 Growing bioinformatics capacity in Africa
💥Nature Podcast
🎧 Listen
🌐 Read
📲Channel: @Bioinformatics
#podcast #Africa
💥Nature Podcast
🎧 Listen
🌐 Read
📲Channel: @Bioinformatics
#podcast #Africa
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🎥 Proteomics for Clinical Biomarkers
💥 From Biotechnology Department at University of the Western Cape
🎞 Watch
📦 Slides
📲Channel: @Bioinformatics
#video #proteomics #biomarker
💥 From Biotechnology Department at University of the Western Cape
🎞 Watch
📦 Slides
📲Channel: @Bioinformatics
#video #proteomics #biomarker
YouTube
20230821 Proteomics for Clinical Biomarkers
Slides for this talk can be downloaded here: https://drive.google.com/file/d/1ILhlG1Ksq1kq1iQnmQBdNcTHVqC_j1Tz/view?usp=sharing
As part of the B.Sc. Honours program at the Biotechnology Department at University of the Western Cape, I edited this lecture…
As part of the B.Sc. Honours program at the Biotechnology Department at University of the Western Cape, I edited this lecture…
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📃 Differential gene expression analysis pipelines and bioinformatic tools for the identification of specific biomarkers: A review
📘Journal: Computational and Structural Biotechnology Journal (CSBJ) (I.F.=6)
🗓Publish year: 2024
🧑💻Authors: Diletta Rosati, Maria Palmieri, Giulia Brunelli, ...
🏢University: University of Siena, Italy - Temple University, USA
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📲Channel: @Bioinformatics
#review #gene_expression #differential #biomarker
📘Journal: Computational and Structural Biotechnology Journal (CSBJ) (I.F.=6)
🗓Publish year: 2024
🧑💻Authors: Diletta Rosati, Maria Palmieri, Giulia Brunelli, ...
🏢University: University of Siena, Italy - Temple University, USA
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📲Channel: @Bioinformatics
#review #gene_expression #differential #biomarker
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📑Machine Learning Techniques for Predicting Drug-Related Side Effects: A Scoping Review
📗Journal: Pharmaceuticals (I.F.=4.3)
🗓Publish year: 2024
🧑💻Authors: Esmaeel Toni,Haleh Ayatollahi,Reza Abbaszadeh, ...
🏢University: Iran University of Medical Sciences, Institute of Biochemistry and Biophysics (IBB) at University of Tehran, Iran
📎 Study the paper
📲Channel: @Bioinformatics
#review #drug #side_effect
📗Journal: Pharmaceuticals (I.F.=4.3)
🗓Publish year: 2024
🧑💻Authors: Esmaeel Toni,Haleh Ayatollahi,Reza Abbaszadeh, ...
🏢University: Iran University of Medical Sciences, Institute of Biochemistry and Biophysics (IBB) at University of Tehran, Iran
📎 Study the paper
📲Channel: @Bioinformatics
#review #drug #side_effect
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Forwarded from Network Analysis Resources & Updates
📃Healthcare knowledge graph construction: A systematic review of the state-of-the-art, open issues, and opportunities
🗓 Publish year: 2023
📘Journal: Journal of Big Data
🧑💻Authors: Bilal Abu-Salih, Muhammad AL-Qurishi, Mohammed Alweshah, Mohammad AL-Smadi, Reem Alfayez and Heba Saadeh
🏢Universities: The University of Jordan, Amman, Jordan
King Saud University, Riyadh, Saudi Arabia
Al-Balqa Applied University, Salt, Jordan
📎 Study paper
📱Channel: @ComplexNetworkAnalysis
#paper #Healthcare #Knowledge_Graph #open_issues #opportunities #review
🗓 Publish year: 2023
📘Journal: Journal of Big Data
🧑💻Authors: Bilal Abu-Salih, Muhammad AL-Qurishi, Mohammed Alweshah, Mohammad AL-Smadi, Reem Alfayez and Heba Saadeh
🏢Universities: The University of Jordan, Amman, Jordan
King Saud University, Riyadh, Saudi Arabia
Al-Balqa Applied University, Salt, Jordan
📎 Study paper
📱Channel: @ComplexNetworkAnalysis
#paper #Healthcare #Knowledge_Graph #open_issues #opportunities #review
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👨💻 PhD fellowship in Bioinformatics/Data Science/Machine Learning
🏢 at Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen
👨🏫Principal supervisor
Albert J. Kooistra, Associate Professor
📬Email:
albert.kooistra@sund.ku.dk
📞phone:
+45 35 32 83 05
▫️Start: 1 October 2024
▫️Duration: 3 years as a PhD student
💣 Deadline: 21 July 2024, 23.59pm CET
🌐 More Details
📲Channel: @Bioinformatics
#job
🏢 at Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen
👨🏫Principal supervisor
Albert J. Kooistra, Associate Professor
📬Email:
albert.kooistra@sund.ku.dk
📞phone:
+45 35 32 83 05
▫️Start: 1 October 2024
▫️Duration: 3 years as a PhD student
💣 Deadline: 21 July 2024, 23.59pm CET
🌐 More Details
📲Channel: @Bioinformatics
#job
employment.ku.dk
PhD-positions
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📄 A review of the current state of single-cell proteomics and future perspective
📕Journal: Analytical and Bioanalytical Chemistry (I.F.=4.3)
🗓Publish year: 2023
🧑💻Authors: Rushdy Ahmad & Bogdan Budnik
🏢University: Harvard University, USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #single_cell #proteomics
📕Journal: Analytical and Bioanalytical Chemistry (I.F.=4.3)
🗓Publish year: 2023
🧑💻Authors: Rushdy Ahmad & Bogdan Budnik
🏢University: Harvard University, USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #single_cell #proteomics
📹 AI in Target Identification and Drug Discovery: Transforming the Future of Medicine
🎞 Watch
📲Channel: @Bioinformatics
#video #ai #drug
🎞 Watch
📲Channel: @Bioinformatics
#video #ai #drug
YouTube
DataBytes | AI in Target Identification and Drug Discovery: Transforming the Future of Medicine
Artificial intelligence (Al) is taking a transformative role in target identification and drug discovery. Today, Al algorithms can analyze vast, multi-modal datasets to identify drug targets, accelerate lead compound discovery, and optimize drug design. Al…
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📄 Integrative computational approaches for discovery and evaluation of lead compound for drug design
📗Journal: Frontiers in Drug Discovery
🗓Publish year: 2024
🧑💻Authors: Utkarsha Naithani & Vandana Guleria
🏢University: Shoolini University, India
📎 Study the paper
📲Channel: @Bioinformatics
#review #drug
📗Journal: Frontiers in Drug Discovery
🗓Publish year: 2024
🧑💻Authors: Utkarsha Naithani & Vandana Guleria
🏢University: Shoolini University, India
📎 Study the paper
📲Channel: @Bioinformatics
#review #drug
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