🎬 Decomposing protein and genomic language models to understand what they are learning
📹 Watch
📲Channel: @Bioinformatics
#video #protein #genomics
📹 Watch
📲Channel: @Bioinformatics
#video #protein #genomics
YouTube
MLCB 2024: Sergey Ovchinnikov (MIT) Decomposing protein and genomic language models to understand...
MLCB 2024: Sergey Ovchinnikov (MIT)
Decomposing protein and genomic language models to understand what they are learning
Decomposing protein and genomic language models to understand what they are learning
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📑 Quantifying trannoscriptome diversity: a review
📓 Journal: Briefings in Functional Genomics (I.F.=2.5)
🗓 Publish year: 2024
🧑💻Authors: Emma F Jones, Anisha Haldar, Vishal H Oza, ...
🏢Universities: The University of Alabama at Birmingham, USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #trannoscriptome
📓 Journal: Briefings in Functional Genomics (I.F.=2.5)
🗓 Publish year: 2024
🧑💻Authors: Emma F Jones, Anisha Haldar, Vishal H Oza, ...
🏢Universities: The University of Alabama at Birmingham, USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #trannoscriptome
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📑 Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper
📕 Journal: PLOS Computational Biology (I.F.=3.8)
🗓 Publish year: 2025
🧑💻Authors: Faye Orcales ,Lucy Moctezuma Tan ,Meris Johnson-Hagler, ...
🏢Universities: University of California San Francisco - San Francisco State University, USA
📎 Study the paper
📲Channel: @Bioinformatics
#tutorial #genomic #antibiotic
📕 Journal: PLOS Computational Biology (I.F.=3.8)
🗓 Publish year: 2025
🧑💻Authors: Faye Orcales ,Lucy Moctezuma Tan ,Meris Johnson-Hagler, ...
🏢Universities: University of California San Francisco - San Francisco State University, USA
📎 Study the paper
📲Channel: @Bioinformatics
#tutorial #genomic #antibiotic
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📄Comprehensive Evaluation of Multi-Omics Clustering Algorithms for Cancer Molecular Subtyping
📘 Journal: International Journal of Molecular Sciences (I.F.=4.9)
🗓 Publish year: 2025
🧑💻Authors: Juan Wang,Lingxiao Wang,Yi Liu, ...
🏢Universities: Anhui Medical University-Beijing Institute of Lifeomics, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #omics #clustering #cancer #subtyping
📘 Journal: International Journal of Molecular Sciences (I.F.=4.9)
🗓 Publish year: 2025
🧑💻Authors: Juan Wang,Lingxiao Wang,Yi Liu, ...
🏢Universities: Anhui Medical University-Beijing Institute of Lifeomics, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #omics #clustering #cancer #subtyping
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📃Molecule generation for drug design: A graph learning perspective
📗 Journal: Fundamental Research (I.F.=5.7)
🗓 Publish year: 2024
🧑💻Authors: Nianzu Yang, Huaijin Wu, Kaipeng Zeng, ...
🏢Universities: Shanghai Jiao Tong University, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #molecule #drug #graph
📗 Journal: Fundamental Research (I.F.=5.7)
🗓 Publish year: 2024
🧑💻Authors: Nianzu Yang, Huaijin Wu, Kaipeng Zeng, ...
🏢Universities: Shanghai Jiao Tong University, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #molecule #drug #graph
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📑Machine learning and related approaches in trannoscriptomics
📙 Journal: Biochemical and Biophysical Research Communications (I.F.=2.5)
🗓 Publish year: 2024
🧑💻Authors: Yuning Cheng, Si-Mei Xu, Kristina Santucci, ...
🏢Universities: University of New South Wales, Australia
📎 Study the paper
📲Channel: @Bioinformatics
#review #machine_learning #trannoscriptomics
📙 Journal: Biochemical and Biophysical Research Communications (I.F.=2.5)
🗓 Publish year: 2024
🧑💻Authors: Yuning Cheng, Si-Mei Xu, Kristina Santucci, ...
🏢Universities: University of New South Wales, Australia
📎 Study the paper
📲Channel: @Bioinformatics
#review #machine_learning #trannoscriptomics
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👨💻 Faculty Member (Bioinformatics)
📍 Bioengineering Department - KFUPM
🇸🇦Dhahran, Eastern, Saudi Arabia
💥King Fahd University of Petroleum & Minerals (KFUPM) invites applications for Assistant/Associate/Full Professor positions in the field of Bioinformatics. We seek outstanding candidates with a strong background in Biology and Computer Science to join our dynamic and interdisciplinary faculty team.
✅Responsibilities:
- Conduct cutting-edge research in bioinformatics and related areas.
- Teach undergraduate and graduate courses in bioinformatics, biology, and computer science.
- Mentor students and contribute to curriculum development.
- Secure research funding and engage in collaborative projects.
✅ Qualifications:
- Ph.D. in Bioinformatics, Bioengineering, Biology, Computer Science, or a closely related field.
- Strong publication record and research achievements.
- Proven teaching experience and mentorship experience for associate and full professor candidates.
- Experience in interdisciplinary collaboration is a plus.
- Preference is given to the following area of expertise: Bioinformatics, Biomarkers Discovery, Biologics Design, Personalized Medicine, A.I in Medicine. Candidates with background and/or degree in biology. And background and/or in computer science
📧 Please send your CV and a cover letter\email expressing your interest, to:
Dr. Yaqub Mahnashi, Bioengineering Chairman at Email: bioe-jobs@kfupm.edu.sa
Dr. Ahmed S. Dalaq, Assistant Professor, at Email: ahmed.dalaq@kfupm.edu.sa
✍️ Potential applicants will be contacted if more documents are needed for screening.
📲Channel: @Bioinformatics
#job #faculty_position #saudi_arabia
📍 Bioengineering Department - KFUPM
🇸🇦Dhahran, Eastern, Saudi Arabia
💥King Fahd University of Petroleum & Minerals (KFUPM) invites applications for Assistant/Associate/Full Professor positions in the field of Bioinformatics. We seek outstanding candidates with a strong background in Biology and Computer Science to join our dynamic and interdisciplinary faculty team.
✅Responsibilities:
- Conduct cutting-edge research in bioinformatics and related areas.
- Teach undergraduate and graduate courses in bioinformatics, biology, and computer science.
- Mentor students and contribute to curriculum development.
- Secure research funding and engage in collaborative projects.
✅ Qualifications:
- Ph.D. in Bioinformatics, Bioengineering, Biology, Computer Science, or a closely related field.
- Strong publication record and research achievements.
- Proven teaching experience and mentorship experience for associate and full professor candidates.
- Experience in interdisciplinary collaboration is a plus.
- Preference is given to the following area of expertise: Bioinformatics, Biomarkers Discovery, Biologics Design, Personalized Medicine, A.I in Medicine. Candidates with background and/or degree in biology. And background and/or in computer science
📧 Please send your CV and a cover letter\email expressing your interest, to:
Dr. Yaqub Mahnashi, Bioengineering Chairman at Email: bioe-jobs@kfupm.edu.sa
Dr. Ahmed S. Dalaq, Assistant Professor, at Email: ahmed.dalaq@kfupm.edu.sa
✍️ Potential applicants will be contacted if more documents are needed for screening.
📲Channel: @Bioinformatics
#job #faculty_position #saudi_arabia
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📽 The Integrative Power of MULTIOMICS In Pursuit of Novel Insights and Discoveries
🎞 Watch
📲Channel: @Bioinformatics
#video #multiomics #metabolomics
🎞 Watch
📲Channel: @Bioinformatics
#video #multiomics #metabolomics
YouTube
The Integrative Power of MULTIOMICS In Pursuit of Novel Insights and Discoveries
Multiomics research is crucial for understanding complex biological systems at a comprehensive level. By integrating data from genomics, trannoscriptomics, proteomics, metabolomics, and other omics disciplines, researchers can unravel intricate interactions…
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📄 New methods for drug synergy prediction: A mini-review
📕 Journal: Current Opinion in Structural Biology (I.F.=6.1)
🗓 Publish year: 2024
🧑💻Authors: Fatemeh Abbasi, Juho Rousu
🏢Universities: University of Tehran, Iran - Aalto University, Finland
📎 Study the paper
📲Channel: @Bioinformatics
#review #drug
📕 Journal: Current Opinion in Structural Biology (I.F.=6.1)
🗓 Publish year: 2024
🧑💻Authors: Fatemeh Abbasi, Juho Rousu
🏢Universities: University of Tehran, Iran - Aalto University, Finland
📎 Study the paper
📲Channel: @Bioinformatics
#review #drug
🔥1
📹 Making sense of gene and protein lists with functional enrichment analysis
💥 from Australian BioCommons
🎞 Watch
📲Channel: @Bioinformatics
#video #gene #protein #enrichment_analysis
💥 from Australian BioCommons
🎞 Watch
📲Channel: @Bioinformatics
#video #gene #protein #enrichment_analysis
YouTube
Making sense of gene and protein lists with functional enrichment analysis
Do you have a long list of genes or proteins from omics experiments that you don’t know what to do with? This webinar explains how functional enrichment analysis can be used to understand what these lists mean by employing gene ontology and pathway information…
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👨🏫 One month International Bioinformatics Workshop by Decode Life.
💥 R for Multiomics Data analysis, (11th Edition) February 2025 💥
🗓 Duration: 21 February to 16 March, 2025
✍️ Registration Link
https://decodelife.co.in
💲 Fees: Rupees 1300 for Indian Participants /USD 30 for international Participants
Features :
▫️ 21 sessions with approximately 35 hrs of learning.
▫️E- Certificate of Participation.
ℹ️ video recording will be shared with participants immediately after each session along with relevant material.
❔Frequently asked questions
https://decodelife.co.in/faq/
📲Channel: @Bioinformatics
💥 R for Multiomics Data analysis, (11th Edition) February 2025 💥
🗓 Duration: 21 February to 16 March, 2025
✍️ Registration Link
https://decodelife.co.in
💲 Fees: Rupees 1300 for Indian Participants /USD 30 for international Participants
Features :
▫️ 21 sessions with approximately 35 hrs of learning.
▫️E- Certificate of Participation.
ℹ️ video recording will be shared with participants immediately after each session along with relevant material.
❔Frequently asked questions
https://decodelife.co.in/faq/
📲Channel: @Bioinformatics
👍1
📃 Foundation models for bioinformatics
📘 Journal: Quantitative Biology (I.F.=0.6)
🗓Publish year: 2024
🧑💻Authors: Ziyu Chen, Lin Wei, Ge Gao
🏢Universities: Peking University, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #Transformer #chatgpt #llm
📘 Journal: Quantitative Biology (I.F.=0.6)
🗓Publish year: 2024
🧑💻Authors: Ziyu Chen, Lin Wei, Ge Gao
🏢Universities: Peking University, China
📎 Study the paper
📲Channel: @Bioinformatics
#review #Transformer #chatgpt #llm
👌2
📄 How natural language processing derived techniques are used on biological data: a systematic review
📗 Journal: Network Modeling Analysis in Health Informatics and Bioinformatics (I.F.=2)
🗓 Publish year: 2024
🧑💻Authors: Emmanouil D. Oikonomou, Petros Karvelis, Nikolaos Giannakeas, ...
🏢Universities: University of Ioannina-Ionian University-Hellenic Open University, Greece
📎 Study the paper
📲Channel: @Bioinformatics
#review #nlp #bio_data
📗 Journal: Network Modeling Analysis in Health Informatics and Bioinformatics (I.F.=2)
🗓 Publish year: 2024
🧑💻Authors: Emmanouil D. Oikonomou, Petros Karvelis, Nikolaos Giannakeas, ...
🏢Universities: University of Ioannina-Ionian University-Hellenic Open University, Greece
📎 Study the paper
📲Channel: @Bioinformatics
#review #nlp #bio_data
❤1👍1
📃A review of methodologies, applications, and future directions in molecular medicine
📓 Journal: EMBO Molecular Medicine (I.F.=9)
🗓 Publish year: 2025
🧑💻Authors: Melissa Wan, Elisabeth M Simonin, Mary Margaret Johnson, ...
🏢Universities: Harvard Chan Occupational and Environmental Medicine - Harvard T. H. Chan School of Public Health Boston - Stanford University; USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #medicine
📓 Journal: EMBO Molecular Medicine (I.F.=9)
🗓 Publish year: 2025
🧑💻Authors: Melissa Wan, Elisabeth M Simonin, Mary Margaret Johnson, ...
🏢Universities: Harvard Chan Occupational and Environmental Medicine - Harvard T. H. Chan School of Public Health Boston - Stanford University; USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #medicine
👍4❤2
📄A Systematic Overview of Single-Cell Trannoscriptomics Databases, their Use cases, and Limitations
🗓 Publish year: 2024
🧑💻Authors: Mahnoor N. Gondal, Saad Ur Rehman Shah, Arul M. Chinnaiyan, ...
🏢Universities: University of Michigan - University of Illinois Business College, USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #single_cell #trannoscriptomics
🗓 Publish year: 2024
🧑💻Authors: Mahnoor N. Gondal, Saad Ur Rehman Shah, Arul M. Chinnaiyan, ...
🏢Universities: University of Michigan - University of Illinois Business College, USA
📎 Study the paper
📲Channel: @Bioinformatics
#review #single_cell #trannoscriptomics
👍4❤2🙏1
📢 From Friday February 21, One-Month International #online Bioinformatics Workshop by DecodeLife! 🌍
💥 R for Multiomics Data Analysis (11th Edition) – February 2025 💥
👨🏫 Learn from Experts | Hands-on Training | Interactive Sessions
📅 Duration: 21st February – 16th March 2025
💰 Fees: ₹1300 (Indian Participants) | $30 (International Participants)
📜 E-Certificate Provided
🔹 What’s Included?
✅ 21 live sessions (~35 hours of learning)
✅ Instant access to video recordings & study material
✅ Comprehensive training in R for multiomics analysis
📌 Register Now: 👉 https://decodelife.co.in
📌 FAQs: 👉 https://decodelife.co.in/faq/
📲Channel: @Bioinformatics
💥 R for Multiomics Data Analysis (11th Edition) – February 2025 💥
👨🏫 Learn from Experts | Hands-on Training | Interactive Sessions
📅 Duration: 21st February – 16th March 2025
💰 Fees: ₹1300 (Indian Participants) | $30 (International Participants)
📜 E-Certificate Provided
🔹 What’s Included?
✅ 21 live sessions (~35 hours of learning)
✅ Instant access to video recordings & study material
✅ Comprehensive training in R for multiomics analysis
📌 Register Now: 👉 https://decodelife.co.in
📌 FAQs: 👉 https://decodelife.co.in/faq/
📲Channel: @Bioinformatics
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