🧾What is the best NGS alignment software?
This question that comes up very often during workshops: what is the best NGS read aligner? What alignment tool do you recommend to use for my next-generation sequencing experiments? Indeed this is a relevant question since read mapping often is a central step in any NGS analysis pipeline.
Traditional sequence alignment tools like BLAST are not suited for NGS. To extract meaningful information from NGS data, one needs to align millions and millions of mostly short sequences. BLAST and similar tools are way too slow for the vast amount of data produced by modern sequencing machines. The advent of these machines ignited the development of a class of new, much faster read aligners...
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📲Channel: @Bioinformatics
This question that comes up very often during workshops: what is the best NGS read aligner? What alignment tool do you recommend to use for my next-generation sequencing experiments? Indeed this is a relevant question since read mapping often is a central step in any NGS analysis pipeline.
Traditional sequence alignment tools like BLAST are not suited for NGS. To extract meaningful information from NGS data, one needs to align millions and millions of mostly short sequences. BLAST and similar tools are way too slow for the vast amount of data produced by modern sequencing machines. The advent of these machines ignited the development of a class of new, much faster read aligners...
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📲Channel: @Bioinformatics
🎞Free Webinars:
⭐️ Introduction to the computational mass spectrometry ⭐️
gentle introductory talk to computational mass spectrometry in two parts
🗓 Duration:
Part One: 18.00-19.00 on 25th of June, Friday (MSK)
Part Two: 18.00-19.00 on 29th of June, Tuesday (MSK)
🔗 Part one Zoom link
This session is a gentle introductory talk to computational mass spectrometry. The seminar will discuss the general application of tandem mass spectrometry, the spectrometers, and the interpretation of the data.
🔗 Part two in Zoom link
This seminar will discuss the computational methods and protocols for analyzing and validating tandem mass spectrometry data annotations.
ℹ️ More information
📲Channel: @Bioinformatics
⭐️ Introduction to the computational mass spectrometry ⭐️
gentle introductory talk to computational mass spectrometry in two parts
🗓 Duration:
Part One: 18.00-19.00 on 25th of June, Friday (MSK)
Part Two: 18.00-19.00 on 29th of June, Tuesday (MSK)
🔗 Part one Zoom link
This session is a gentle introductory talk to computational mass spectrometry. The seminar will discuss the general application of tandem mass spectrometry, the spectrometers, and the interpretation of the data.
🔗 Part two in Zoom link
This seminar will discuss the computational methods and protocols for analyzing and validating tandem mass spectrometry data annotations.
ℹ️ More information
📲Channel: @Bioinformatics
👨🏻💻 Sample bioinformatics analysis for Identification of hub genes
🌐https://www.tandfonline.com/doi/full/10.1080/16078454.2021.1943617
📲Channel: @Bioinformatics
🌐https://www.tandfonline.com/doi/full/10.1080/16078454.2021.1943617
📲Channel: @Bioinformatics
Taylor & Francis
Identification of hub genes with prognostic values in multiple myeloma by bioinformatics analysis
Multiple myeloma (MM) is a malignant disease with abnormal proliferation of clonal plasma cells. Hypoxia is an important factor in the pathogenesis and development of MM. However, the underlying me...
📈Two useful Metabolomics articles
▫️Metabolomics in the Past, Present, and Future
▫️Frequently asked questions about metabolomics
📲Channel: @Bioinformatics
▫️Metabolomics in the Past, Present, and Future
▫️Frequently asked questions about metabolomics
📲Channel: @Bioinformatics
🗒Comprehensive comparison of cloud-based NGS data analysis and alignment tools
🌐https://www.sciencedirect.com/science/article/pii/S2352914819303673
📲Channel: @Bioinformatics
🌐https://www.sciencedirect.com/science/article/pii/S2352914819303673
📲Channel: @Bioinformatics
🎬 Free Webinar
🌡 Application of metabolomics in natural products drug discovery
🗓 Time:
Jul 2, 2021 03:00 PM in Kuala Lumpur
✍️ZOOM link registration:
https://bit.ly/3h0qXSZ
📲Channel: @Bioinformatics
🌡 Application of metabolomics in natural products drug discovery
🗓 Time:
Jul 2, 2021 03:00 PM in Kuala Lumpur
✍️ZOOM link registration:
https://bit.ly/3h0qXSZ
📲Channel: @Bioinformatics
💊 Drug Repurposing Using Biological Networks
In this paper, authors provide an in-depth review of the main applications of drug repositioning that have been carried out using biological network models. The goal of this review is to show the usefulness of these computational methods to predict associations and to find candidate drugs for repositioning in new indications of certain diseases.
📑 Read the paper
📲Channel: @Bioinformatics
In this paper, authors provide an in-depth review of the main applications of drug repositioning that have been carried out using biological network models. The goal of this review is to show the usefulness of these computational methods to predict associations and to find candidate drugs for repositioning in new indications of certain diseases.
📑 Read the paper
📲Channel: @Bioinformatics
👩🏫Free Online Course:
Design Genomics and Bioinformatics Training
⏳ Duration: 3 weeks
⌚️Weekly study: 5 hours
🌐Format: 100% online
🔰Start: now
ℹ️ Join here and see more information
📽 Trailer: http://youtu.be/fBfatQHA3tg
📲Channel: @Bioinformatics
Design Genomics and Bioinformatics Training
⏳ Duration: 3 weeks
⌚️Weekly study: 5 hours
🌐Format: 100% online
🔰Start: now
ℹ️ Join here and see more information
📽 Trailer: http://youtu.be/fBfatQHA3tg
📲Channel: @Bioinformatics
FutureLearn
Train the Trainer: Design Genomics and Bioinformatics Training - FutureLearn
Explore how to train future experts in genomics techniques with this online Train the Trainer course from Wellcome Genome Campus.
🏢 Brazilian Symposium on Bioinformatics 2021
💥The Brazilian Symposium on Bioinformatics is an international conference which covers all aspects of Bioinformatics and Computational Biology. BSB is organized by the special interest group in Computational Biology (CE-BioComp) of the Brazilian Computer Society (SBC).
🗓 Date: 22-26 November, 2021
🖇Website & more info.:
https://bsb.sbc.org.br/2021/
📲Channel: @Bioinformatics
💥The Brazilian Symposium on Bioinformatics is an international conference which covers all aspects of Bioinformatics and Computational Biology. BSB is organized by the special interest group in Computational Biology (CE-BioComp) of the Brazilian Computer Society (SBC).
🗓 Date: 22-26 November, 2021
🖇Website & more info.:
https://bsb.sbc.org.br/2021/
📲Channel: @Bioinformatics
Bioinformatics
🧑🏫 IV International Workshop on Computational Mathematics and Bioinformatics 📌Topics: ▫️Computational Mathematics ▫️High Performance Computing ▫️Computational Design of Nanomaterials ▫️Bioinformatics and its applications ▫️Neuroinformatics 🗓 Dates: May…
🧑🏫 IV International Workshop on Computational Mathematics and Bioinformatics
💣 Paper submission deadline is extended to July 11, 2021
🗞https://mfc-uci.blogspot.com/2021/07/news-iv-international-workshop-on.html
📲Channel: @Bioinformatics
💣 Paper submission deadline is extended to July 11, 2021
🗞https://mfc-uci.blogspot.com/2021/07/news-iv-international-workshop-on.html
📲Channel: @Bioinformatics
Blogspot
News: IV International Workshop on Computational Mathematics and Bioinformatics
Dear colleagues: We are very happy with the contributions we have received, these are currently in the peer arbitration process. In thi...
🧑🏫CellPress Webinar
Spatial and temporal genomics in cancer research
🗓 Date: July 15, 2021
🕰Time: 12 pm ET
✍🏻Registeration and more info
📲Channel: @Bioinformatics
Spatial and temporal genomics in cancer research
🗓 Date: July 15, 2021
🕰Time: 12 pm ET
✍🏻Registeration and more info
📲Channel: @Bioinformatics
🍯 Application of network link prediction in drug discovery
📑https://link.springer.com/article/10.1186/s12859-021-04082-y
📲Channel: @Bioinformatics
📑https://link.springer.com/article/10.1186/s12859-021-04082-y
📲Channel: @Bioinformatics
🩺Systems biology in disease modeling and control, analysis and perspectives
This review introduces biomedical applications and analyses of interactions among omics and drug molecules for modeling disease mechanism and drug response. The therapeutical performance can be improved by combining the predictive and computational models with drug administration designed by control laws. The challenges are discussed for its clinic uses.
📑 Study the paper
📲Channel: @Bioinformatics
This review introduces biomedical applications and analyses of interactions among omics and drug molecules for modeling disease mechanism and drug response. The therapeutical performance can be improved by combining the predictive and computational models with drug administration designed by control laws. The challenges are discussed for its clinic uses.
📑 Study the paper
📲Channel: @Bioinformatics
☁️ Cloud Computing for Next-Generation Sequencing Data Analysis
In this chapter, we will review some cloud-based systems and solutions for NGS data analysis, discuss the practical hurdles and limitations in cloud computing, including data transfer and security, and share the lessons we learned from the implementation of Rainbow, a cloud-based tool for large-scale genome sequencing data analysis.
📑 Study the chapter
📲Channel: @Bioinformatics
In this chapter, we will review some cloud-based systems and solutions for NGS data analysis, discuss the practical hurdles and limitations in cloud computing, including data transfer and security, and share the lessons we learned from the implementation of Rainbow, a cloud-based tool for large-scale genome sequencing data analysis.
📑 Study the chapter
📲Channel: @Bioinformatics
💊 Precision medicine new opportunity for complex diseases
Here, We provide a comprehensive review of genomic-driven precision medicine of complex diseases across major medical specialties.
📄https://medicalxpress.com/news/2021-07-precision-medicine-opportunity-complex-diseases.html
📲Channel: @Bioinformatics
Here, We provide a comprehensive review of genomic-driven precision medicine of complex diseases across major medical specialties.
📄https://medicalxpress.com/news/2021-07-precision-medicine-opportunity-complex-diseases.html
📲Channel: @Bioinformatics
👨🔬Artificial intelligence applications in psychoradiology
Abstract
One important challenge in psychiatric research is to translate findings from brain imaging research studies that identified brain alterations in patient groups into an accurate diagnosis at an early stage of illness, prediction of prognosis before treatment, and guidance for selection of effective treatments that target patient-relevant pathophysiological features. This is the primary aim of the field of Psychoradiology. Using databases collected from large samples at multiple centers, sophisticated artificial intelligence (AI) algorithms may be used to develop clinically useful image analysis pipelines that can help physicians diagnose, predict, and make treatment decisions. In this review, we summarize psychoradiological research using ...
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📲Channel: @Bioinformatics
Abstract
One important challenge in psychiatric research is to translate findings from brain imaging research studies that identified brain alterations in patient groups into an accurate diagnosis at an early stage of illness, prediction of prognosis before treatment, and guidance for selection of effective treatments that target patient-relevant pathophysiological features. This is the primary aim of the field of Psychoradiology. Using databases collected from large samples at multiple centers, sophisticated artificial intelligence (AI) algorithms may be used to develop clinically useful image analysis pipelines that can help physicians diagnose, predict, and make treatment decisions. In this review, we summarize psychoradiological research using ...
📑 Study the paper
📲Channel: @Bioinformatics
🧠 Complex Brain Network Analysis and Its Applications to Brain Disorders: A Survey
It is well known that most brain disorders are complex diseases, such as Alzheimer’s disease (AD) and schizophrenia (SCZ). In general, brain regions and their interactions can be modeled as complex brain network, which describe highly efficient information transmission in a brain. Therefore, complex brain network analysis plays an important role in the study of complex brain diseases. ... The purpose of this survey is to provide a comprehensive overview for complex brain network analysis and its applications to brain disorders.
📑Study the paper
📲Channel: @Bioinformatics
It is well known that most brain disorders are complex diseases, such as Alzheimer’s disease (AD) and schizophrenia (SCZ). In general, brain regions and their interactions can be modeled as complex brain network, which describe highly efficient information transmission in a brain. Therefore, complex brain network analysis plays an important role in the study of complex brain diseases. ... The purpose of this survey is to provide a comprehensive overview for complex brain network analysis and its applications to brain disorders.
📑Study the paper
📲Channel: @Bioinformatics
👨🏻💻 Introduction to Protein Primary structure Analysis
✍️ Level: Elementary
📑 Study the article
📲Channel: @Bioinformatics
✍️ Level: Elementary
📑 Study the article
📲Channel: @Bioinformatics
📑Graph-Based Deep Learning for Medical Diagnosis and Analysis: Past, Present and Future
🌐 Paper link
📲Channel: @Bioinformatics
🌐 Paper link
📲Channel: @Bioinformatics