Light derails electrons through graphene
https://phys.org/news/2022-03-derails-electrons-graphene.html
https://phys.org/news/2022-03-derails-electrons-graphene.html
phys.org
Light derails electrons through graphene
The way electrons flow in a material determines its electronic properties. For example, when a voltage is sustained across a conducting material, electrons start flowing, generating an electrical current. ...
Elk version 8.4.6 has just been released.
https://sourceforge.net/projects/elk/
This version has several important improvements and bug fixes, including a problem related to restarting TDDFT calculations (tasks 461 and 463). This was discovered by Antonio Sanna.
The second-order optics code has also been completely re-written and now follows the derivation and convention of Sipe and Ghahramani in Phys. Rev. B 48, 11705 (1993). Thanks go to Xavier Gonze for pointing out an error in our non-linear optics paper Phys. Rev. B 67, 165332 (2003). This has now been fixed in the code.
We also added 'batch' calculations as a new feature: this allows a single run of Elk to perform multiple calculations while varying a particular parameter. For example, you can produce an energy-vs-volume plot, or check the convergence of the magnetic moment with respect to the number of k-points, all in one run. See the examples in elk/examples/batch-calculations for details. Note that additional input and output variables will be added upon request.
Ultra-long range calculations have been significantly sped up, thanks to improvements in calculating the long-range density and magnetisation.
Finally, Elk has been recognized with a Community Choice award by SourceForge; thanks to all the users and contributors for making the code as useful as it is, as well as for making the forums a congenial place for everyone.
https://sourceforge.net/projects/elk/
This version has several important improvements and bug fixes, including a problem related to restarting TDDFT calculations (tasks 461 and 463). This was discovered by Antonio Sanna.
The second-order optics code has also been completely re-written and now follows the derivation and convention of Sipe and Ghahramani in Phys. Rev. B 48, 11705 (1993). Thanks go to Xavier Gonze for pointing out an error in our non-linear optics paper Phys. Rev. B 67, 165332 (2003). This has now been fixed in the code.
We also added 'batch' calculations as a new feature: this allows a single run of Elk to perform multiple calculations while varying a particular parameter. For example, you can produce an energy-vs-volume plot, or check the convergence of the magnetic moment with respect to the number of k-points, all in one run. See the examples in elk/examples/batch-calculations for details. Note that additional input and output variables will be added upon request.
Ultra-long range calculations have been significantly sped up, thanks to improvements in calculating the long-range density and magnetisation.
Finally, Elk has been recognized with a Community Choice award by SourceForge; thanks to all the users and contributors for making the code as useful as it is, as well as for making the forums a congenial place for everyone.
SourceForge
Elk
Download Elk for free. An all-electron full-potential linearised augmented-planewave (FP-LAPW) code. Designed to be as developer friendly as possible so that new developments in the field of density functional theory (DFT) can be added quickly and reliably.
SELFIES and the future of molecular string representations
Artificial intelligence (AI) and machine learning (ML) are expanding in popularity for broad applications to challenging tasks in chemistry and materials science. Examples include the prediction of properties, the discovery of new reaction pathways, or the design of new molecules. The machine needs to read and write fluently in a chemical language for each of these tasks. Strings are a common tool to represent molecular graphs, and the most popular molecular string representation, SMILES, has powered cheminformatics since the late 1980s. However, in the context of AI and ML in chemistry, SMILES has several shortcomings -- most pertinently, most combinations of symbols lead to invalid results with no valid chemical interpretation. To overcome this issue, a new language for molecules was introduced in 2020 that guarantees 100\% robustness: SELFIES (SELF-referencIng Embedded Strings). SELFIES has since simplified and enabled numerous new applications in chemistry. In this manunoscript, we look to the future and discuss molecular string representations, along with their respective opportunities and challenges. We propose 16 concrete Future Projects for robust molecular representations. These involve the extension toward new chemical domains, exciting questions at the interface of AI and robust languages and interpretability for both humans and machines. We hope that these proposals will inspire several follow-up works exploiting the full potential of molecular string representations for the future of AI in chemistry and materials science.
https://arxiv.org/abs/2204.00056
Artificial intelligence (AI) and machine learning (ML) are expanding in popularity for broad applications to challenging tasks in chemistry and materials science. Examples include the prediction of properties, the discovery of new reaction pathways, or the design of new molecules. The machine needs to read and write fluently in a chemical language for each of these tasks. Strings are a common tool to represent molecular graphs, and the most popular molecular string representation, SMILES, has powered cheminformatics since the late 1980s. However, in the context of AI and ML in chemistry, SMILES has several shortcomings -- most pertinently, most combinations of symbols lead to invalid results with no valid chemical interpretation. To overcome this issue, a new language for molecules was introduced in 2020 that guarantees 100\% robustness: SELFIES (SELF-referencIng Embedded Strings). SELFIES has since simplified and enabled numerous new applications in chemistry. In this manunoscript, we look to the future and discuss molecular string representations, along with their respective opportunities and challenges. We propose 16 concrete Future Projects for robust molecular representations. These involve the extension toward new chemical domains, exciting questions at the interface of AI and robust languages and interpretability for both humans and machines. We hope that these proposals will inspire several follow-up works exploiting the full potential of molecular string representations for the future of AI in chemistry and materials science.
https://arxiv.org/abs/2204.00056
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casanova_paez_goerigk_2021_time_dependent_long_range_corrected_double.pdf
2 MB
Time-Dependent Long-Range-Corrected Double-Hybrid Density Functionals with Spin-Component and Spin-Opposite Scaling: A Comprehensive Analysis of Singlet–Singlet and Singlet–Triplet Excitation Energies
In a sea of magic angles, 'twistons' keep electrons flowing through three layers of graphene
https://phys.org/news/2022-04-sea-magic-angles-twistons-electrons.html
https://phys.org/news/2022-04-sea-magic-angles-twistons-electrons.html
phys.org
In a sea of magic angles, 'twistons' keep electrons flowing through three layers of graphene
The discovery of superconductivity in two ever-so-slightly twisted layers of graphene made waves a few years ago in the quantum materials community. With just two atom-thin sheets of carbon, researchers ...
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Chemical Kinetics and Reaction Dynamics.pdf
15.6 MB
Chemical Kinetics and Reaction Dynamics
Carbon nanotubes could stabilize energy-rich nitrogen chains – Physics World
https://physicsworld.com/a/carbon-nanotubes-could-stabilize-energy-rich-nitrogen-chains/
https://physicsworld.com/a/carbon-nanotubes-could-stabilize-energy-rich-nitrogen-chains/
Physics World
Carbon nanotubes could stabilize energy-rich nitrogen chains
Machine learning predicts the stability of polymeric nitrogen
Open Access
A Practical Beginner’s Guide to Cyclic Voltammetry
https://pubs.acs.org/doi/10.1021/acs.jchemed.7b00361
A Practical Beginner’s Guide to Cyclic Voltammetry
https://pubs.acs.org/doi/10.1021/acs.jchemed.7b00361
ACS Publications
A Practical Beginner’s Guide to Cyclic Voltammetry
Despite the growing popularity of cyclic voltammetry, many students do not receive formalized training in this technique as part of their coursework. Confronted with self-instruction, students can be left wondering where to start. Here, a short introduction…
Researchers create a magnet made of one molecule
https://phys.org/news/2022-04-magnet-molecule.html
https://phys.org/news/2022-04-magnet-molecule.html
phys.org
Researchers create a magnet made of one molecule
Sometimes making a brand-new type of box requires outside-the-box thinking, which is exactly what Spartan chemists used to create an eight-atom, magnetic cube.
Fundamentals of moleular symmetry - Jensen.pdf
23.8 MB
Fundamentals of moleular symmetry - Jensen
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Study evaluates deep learning models that decode the functional properties of proteins
https://phys.org/news/2022-04-deep-decode-functional-properties-proteins.html
https://phys.org/news/2022-04-deep-decode-functional-properties-proteins.html
phys.org
Study evaluates deep learning models that decode the functional properties of proteins
Deep learning–based language models, such as BERT, T5, XLNet and GPT, are promising for analyzing speech and texts. In recent years, however, they have also been applied in the fields of biomedicine ...
Do you have a favorite Density Functional?
Anonymous Poll
40%
B3LYP
8%
PBE
15%
PBE0
3%
SCAN
7%
ωB97X-D3
1%
TPSS
5%
CAM-B3LYP
10%
The M06, M06L or MN family
9%
I'm rich. I only do ab initio. 🤠
3%
Other (comment?)
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Reaction rates beyond transition state theory? The new platform Overreact (http://github.com/geem-lab/overreact) from the group of @CaramoriFinoto can use ORCA for the QM part and include tunneling, concentration and the whole microkinetics into the models. #compchem
https://onlinelibrary.wiley.com/doi/10.1002/jcc.26861
https://onlinelibrary.wiley.com/doi/10.1002/jcc.26861
GitHub
GitHub - geem-lab/overreact: ⚛️📈 Create and analyze chemical microkinetic models built from computational chemistry data. Crafted…
⚛️📈 Create and analyze chemical microkinetic models built from computational chemistry data. Crafted at the @geem-lab. - GitHub - geem-lab/overreact: ⚛️📈 Create and analyze chemical microkinetic mo...
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Stylish Academic Writing.pdf
896.2 KB
Stylish Academic Writing - Helen Sword
Watch "Schrodinger Equation and the Wave Function (Full Course)" on YouTube
https://youtu.be/WcNiA06WNvI
https://youtu.be/WcNiA06WNvI
YouTube
Schrodinger Equation. Get the Deepest Understanding.
https://www.youtube.com/watch?v=WcNiA06WNvI&list=PLTjLwQcqQzNKzSAxJxKpmOtAriFS5wWy4
Theoretical Physics Book
https://www.azonlinks.com/B0CYZ279NN
Physics Equations Book
https://www.azonlinks.com/B0C47N3TGF
My Daily Blog about my life: https://aleksandr.live…
Theoretical Physics Book
https://www.azonlinks.com/B0CYZ279NN
Physics Equations Book
https://www.azonlinks.com/B0C47N3TGF
My Daily Blog about my life: https://aleksandr.live…
❤5👍1
Watch "Mathematical Foundations of Quantum Mechanics - Ch. 3: Why do we need a Hilbert Space? (TEASER#2)" on YouTube
https://youtu.be/_nL4SznGPgU
https://youtu.be/_nL4SznGPgU
YouTube
Mathematical Foundations of Quantum Mechanics - Ch. 3: Why do we need a Hilbert Space? (TEASER#2)
Hello!
This upload is a teaser for a series I am currently working on, Mathematical Foundations of Quantum Mechanics. This series will give intuition into the fundamental mathematics that underlies quantum mechanics.
I am hoping to answers questions such…
This upload is a teaser for a series I am currently working on, Mathematical Foundations of Quantum Mechanics. This series will give intuition into the fundamental mathematics that underlies quantum mechanics.
I am hoping to answers questions such…
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By Stephan Grimme and co-workers:
Best Practice DFT Protocols for Basic Molecular Computational Chemistry
Nowadays, many chemical investigations can be supported theoretically by routine molecular structure calculations, conformer ensembles, reaction energies, barrier heights, and predicted spectroscopic properties. Such standard computational chemistry applications are most often conducted with density functional theory (DFT) and atom-centered atomic orbital basis sets implemented in many standard quantum chemistry software packages. This work aims to provide general guidance on the various technical and methodological aspects of DFT calculations for molecular systems, and how to achieve an optimal balance between accuracy, robustness, and computational efficiency through multi-level approaches. The main points discussed are the density functional, the atomic orbital basis sets, and the computational protocol to describe and predict experimental behavior properly. This is done in three main parts: Firstly, in the form of a step-by-step decision tree to guide the overall computational approach depending on the problem; secondly, using a recommendation matrix that addresses the most critical aspects regarding the functional and basis set depending on the computational task at hand (structure optimization, reaction energy calculations, etc.); and thirdly, by applying all steps to some representative examples to illustrate the recommended protocols and effect of methodological choices.
https://chemrxiv.org/engage/chemrxiv/article-details/625eb9c9742e9f89b7639c5b
Best Practice DFT Protocols for Basic Molecular Computational Chemistry
Nowadays, many chemical investigations can be supported theoretically by routine molecular structure calculations, conformer ensembles, reaction energies, barrier heights, and predicted spectroscopic properties. Such standard computational chemistry applications are most often conducted with density functional theory (DFT) and atom-centered atomic orbital basis sets implemented in many standard quantum chemistry software packages. This work aims to provide general guidance on the various technical and methodological aspects of DFT calculations for molecular systems, and how to achieve an optimal balance between accuracy, robustness, and computational efficiency through multi-level approaches. The main points discussed are the density functional, the atomic orbital basis sets, and the computational protocol to describe and predict experimental behavior properly. This is done in three main parts: Firstly, in the form of a step-by-step decision tree to guide the overall computational approach depending on the problem; secondly, using a recommendation matrix that addresses the most critical aspects regarding the functional and basis set depending on the computational task at hand (structure optimization, reaction energy calculations, etc.); and thirdly, by applying all steps to some representative examples to illustrate the recommended protocols and effect of methodological choices.
https://chemrxiv.org/engage/chemrxiv/article-details/625eb9c9742e9f89b7639c5b
ChemRxiv
Best Practice DFT Protocols for Basic Molecular Computational Chemistry
Nowadays, many chemical investigations can be supported theoretically by routine molecular structure calculations, conformer ensembles, reaction energies, barrier heights, and predicted spectroscopic properties.
Such standard computational chemistry applications…
Such standard computational chemistry applications…
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