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While "orgonite" is considered a pseudoscientific concept, you can model its theoretical physical structure (a random array of metallic particles in a dielectric resin) using high-end Computational Electromagnetics (CEM) software rather than standard electrochemical tools.

To draft and animate this specific 3D schematic, the following software suites are most capable:

COMSOL Multiphysics (AC/DC Module): This is the gold standard for your specific requirements. You can use its Geometry tools to create a random distribution of 3D objects (acting as your secondary inductors) within a block (the dielectric medium). It allows for 3D inductor modeling and can simulate how these particles interact with external electromagnetic fields to visualize potential "filtration" or attenuation effects.

Ansys HFSS: A premier 3D electromagnetic field solver used for complex high-frequency structures. It is highly effective for simulating how random metallic arrays scatter or absorb electromagnetic waves, which aligns with your goal of animating "white noise filtration" activity.

CST Studio Suite (SIMULIA): Offers specialized solvers for charged particle dynamics and optical frequencies. It is excellent for visualizing wave behavior in "matter" and can generate high-quality animations of electric and magnetic fields as they pass through composite materials.

Remcom XFdtd: This full-wave 3D EM simulation software is specifically designed for analyzing EM fields in complex, high-fidelity devices. It includes a specialized FDTD solver that is efficient for problems with a high number of unknowns, such as a "random array" of many small components.

Implementation Strategy

Drafting: Use the software's internal CAD tools or import a 3D model. You can noscript a randomized placement of metallic spheres or coils (the "secondary inductors") within a defined resin volume.
Material Properties: Assign a high dielectric constant to the medium (resin) and high conductivity/permeability to the metal particles.

Simulation: Apply a White Gaussian Noise signal as the input electromagnetic field.

Animation: Use "Field Plots" to animate the Poynting vector or electric field lines, showing how energy is dissipated or redirected by the internal array.

Are you looking for a free/open-source alternative (like OpenEMS) or a commercial-grade suite for professional prototyping?