💥 A good flowchart for RNASeq data analysis after preparing the expression matrix

Channel: @Bioinformatics

📑 Online tutorial
Molecular dynamic modeling
Simulations of proteins, lipids, and nucleic acids with GROMACS

http://www.mdtutorials.com/gmx/index.html

Channel: @Bioinformatics

🎞 Lecture and training videos from one of Bioinformatics channel members
💥Dr. Girinath Pillai
(Scientist working on drug discovery drug design and bioinformatics)

https://www.youtube.com/giribio

Channel: @Bioinformatics

Dear All

Drug Discovery Hackathon 2020
more details: https://innovateindia.mygov.in/ddh2020/

We are starting FREE massive training course every day (M-F) on fundamental concepts of drug discovery and development. 30-40 sessions per verticals (V1, V2, V3)
Every Saturdays there will Q&A session for 2-3hrs

V1 - Science behind drug discovery - 2:30pm-4:00pm
V2 - AI ML modelling, Statistics - 4:00pm - 5:30pm
V3 - Practical session on Open and Proprietary softwares for CADD, ADME, MD, etc. - 6:00pm - 7:30pm
More details on the sessions from tomorrow : http://www.neist.res.in/ddh2020/

Sessions will be streamed on MIC Youtube channel: https://www.youtube.com/channel/UC--MSNrR_zO4Zb5OvwjWF4A

I am happy to answer any queries. Thanks!

💥Simple paper (easy computation method) that can be generalized into any bipartite relationship in biology or medicine
from Cancer Informatics Journal

Computational Prediction of Probable Single Nucleotide Polymorphism-Cancer Relationships
https://journals.sagepub.com/doi/full/10.1177/1176935120942216

Channel: @Bioinformatics

🎬 Bioinformatics related Ted Talk

https://www.ted.com/talks/irina_kareva_math_can_help_uncover_cancer_s_secrets

Channel: @Bioinformatics

💻 Common generic workflow for a machine learning analysis of omics data

including steps to reduce the dimension of the data through feature selection or feature extraction, higher-level machine learning analysis for classifying omics data samples (a supervised analysis) or clustering the samples (an unsupervised analysis), and evaluation of the obtained machine learning models on external test data

Channel: @Bioinformatics

Dear All,

We would like to inform that our September 2020 introductory course on Pharmaceutical Bioinformatics (7.5 ECTS credits) given by Uppsala University is now open for late application.

The course, which is free of charge for EU/EAA-citizens, is suited for students, researchers, post docs and teachers who are interested to learn how complex chemical and biomedical processes can be investigated even down to their finest chemical details using informatics, and how this can be used for the studies of drugs.

✍️To receive further information sign up at http://www.pharmbio.org .

📕Course literature is the textbook Introduction to Pharmaceutical Bioinformatics. More information is available here:
http://www.pharmbio.org/pharmbio.php?f1=uzl65L61lBL65

🧑‍🏫 More information on additional courses is available at http://www.pharmbio.org/pharmbio.php?f1=plh65Lr63pBLg65g

💥Note that the formal applications for the courses take place at:
https://www.universityadmissions.se/intl/search?period=9&freeText=pharmaceutical+bioinformatics&semesterPart=0

💥Note also In order to attend it's mandatory that you sign up at universityadmissions.se and submit all documents requested and the necessary credits.

IF you are NON-EU/EAA-citizen or want to attend twithout showing formal
credits - you may apply to our commissioned courses - you find more information on
this option here: www.pharmbio.org/pharmbio.php?f1=63p--zggzpo6564


Also please note that late applications are only open until August 15, 2020. Please therefore apply as soon as possible to be able to attend!

If you have any questions regarding the courses we are at your disposal at pharmbioinf@farmbio.uu.se

All our best regards

The Pharmaceutical Bioinformatics
Group at Uppsala University

🦠 Sequence analysis of SARS-CoV-2
using Entrez Direct, BLAST, and ClustalW

From: Dave Tong's Blog

Part 1:
https://davetang.org/muse/2020/03/05/sequence-analysis-sars-cov-2/

Part 2:
https://davetang.org/muse/2020/03/06/sequence-analysis-of-sars-cov-2-part-2/

Part 3:
https://davetang.org/muse/2020/03/12/sequence-analysis-of-sars-cov-2-part-3/

Channel: @Bioinformatics

📓 Applications of Network Analysis in Biomedicine
First Online: 25 July 2020

https://link.springer.com/protocol/10.1007/978-1-0716-0904-0_4

Channel: @Bioinformatics

💸 Commercialization in bioinformatics research: why and how

https://www.rna-seqblog.com/commercialization-in-bioinformatics-research-why-and-how/

Channel: @Bioinformatics

🎞 Gene Expression Profiling
by Florence Cavalli

https://www.youtube.com/watch?v=E7P0UBcfbn4

Channel: @Bioinformatics

🏷 Introduction to Biological Pathway Databases

https://omicstutorials.com/introduction-to-biological-pathway-databases/

Channel: @Bioinformatics

📚 The Applications of Machine Learning in Biology

This article points to identifying gene coding regions, structure prediction, classification of cellular images, genome analysis, drug discovery and ... as some applications of machine learning in biology.
It also introduces the Cell Profiler, DeepVariant, TensorFlow and Atomwise as some machine learning tools used in biology.

https://www.kolabtree.com/blog/applications-of-machine-learning-in-biology/amp/

Channel: @Bioinformatics

📎 A new paper from PLOS Computational Biology

Ten simple rules for reading a scientific paper

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008032

Channel: @Bioinformatics

🔜 Scientific Panel:
Updates on COVID-19

🕰 Wednesday, 5 August 2020; 5:00-6:00 AM (UTC);


📕 Professor George Rutherford
Department of Epidemiology, University of California, San Francisco
Title: “The recent epidemiology of COVID-19 in the United States and California: the role of micro-epidemics”

📕 Dr. Jennifer Babik
Division of Infectious Diseases, University of California, San Francisco
Title: “Updates in COVID-19 Therapeutics”


🌐 Online Panel:
https://sr.kmu.ac.ir/ch/ifsh

Channel: @Bioinformatics

🧬 Want To Analyze Genes in the Cloud?

✍️Try Butler
https://butler.readthedocs.io/en/latest/

🔎You can also study this brief communication from nature biotechnology, Feb 2020, for more information:
https://www.nature.com/articles/s41587-019-0360-3

Channel: @Bioinformatics

🎬 How to create Cytoscape PPI Network layouts

https://www.youtube.com/watch?v=y1a6dZTnkNE&pbjreload=101

Channel: @Bioinformatics

Scientists rename human genes to stop Microsoft Excel from misreading them as dates - The Verge
https://www.theverge.com/2020/8/6/21355674/human-genes-rename-microsoft-excel-misreading-dates

Channel: @Bioinformatics