LIVE - Starting in 20 min:
https://www.youtube.com/watch?v=u1E2OzH3L4k
* Prof. Chao Zhang - Modelling Electrolyte Materials with Atomistic Machine Learning
* Prof. Caetano R. Miranda - Materials by design towards a sustainable world: coupling multiscale simulations, virtual reality and machine learning
https://www.youtube.com/watch?v=u1E2OzH3L4k
* Prof. Chao Zhang - Modelling Electrolyte Materials with Atomistic Machine Learning
* Prof. Caetano R. Miranda - Materials by design towards a sustainable world: coupling multiscale simulations, virtual reality and machine learning
YouTube
CompChem2021 - Day 1 - Session 2 (Prof. Chao Zang and Prof. Caetano R. Miranda)
Schedule:
14:00 - 15:30
Invited Speaker: Prof. Chao Zang
Title: Modelling Electrolyte Materials with Atomistic Machine Learning
15:30 - 17:00
Invited Speaker: Prof. Caetano R. Miranda
Title: Materials by design towards a sustainable world: coupling multiscale…
14:00 - 15:30
Invited Speaker: Prof. Chao Zang
Title: Modelling Electrolyte Materials with Atomistic Machine Learning
15:30 - 17:00
Invited Speaker: Prof. Caetano R. Miranda
Title: Materials by design towards a sustainable world: coupling multiscale…
LIVE Now!
https://youtu.be/blu2x8c6VjI
https://youtu.be/blu2x8c6VjI
YouTube
CompChem2021 - Day 2 - Session 2 (Prof. Manuel N. Melo and Prof. Michael Shirts)
Schedule:
14:00 - 15:00
Invited Speaker: Prof. Manuel N. Melo
Title: Using MDAnalysis for structural work, before and after simulation
15:00 - 16:00
Invited Speaker: Prof. Michael Shirts
Title: Using mixture distributions and maximum likelihood to calculate…
14:00 - 15:00
Invited Speaker: Prof. Manuel N. Melo
Title: Using MDAnalysis for structural work, before and after simulation
15:00 - 16:00
Invited Speaker: Prof. Michael Shirts
Title: Using mixture distributions and maximum likelihood to calculate…
Starting soon:
Invited Speaker: Prof. Michael Shirts
Title: Using mixture distributions and maximum likelihood to calculate thermodynamic properties from simulations
Invited Speaker: Prof. Michael Shirts
Title: Using mixture distributions and maximum likelihood to calculate thermodynamic properties from simulations
LIVE! Starting in 30 min: https://www.youtube.com/watch?v=bEb9PSuJQLU
ORAL LECTURE 4 - Karine Nascimento de Andrade (UFF) - Hydrolysis of alkyl halides: the influence of water solvation models on the SNX mechanism
ORAL LECTURE 5 - Dayenny Louise D'Amato (UFF) - Gold nanoparticles immunoassay for the fast detection of SARS-CoV-2 spike protein by Dynamic Light Scattering
ORAL LECTURE 6 - Isabela Alves de Albuquerque Bessa (UFF) - Mesoporous silica/hydroxyapatite nanocomposites: a biocompatible material for cancer treatment
Invited Speaker: Prof. Andrew S. Paluch
Title: Predicting the Distribution of Drug-like Solutes Between Octanol and Water
ORAL LECTURE 4 - Karine Nascimento de Andrade (UFF) - Hydrolysis of alkyl halides: the influence of water solvation models on the SNX mechanism
ORAL LECTURE 5 - Dayenny Louise D'Amato (UFF) - Gold nanoparticles immunoassay for the fast detection of SARS-CoV-2 spike protein by Dynamic Light Scattering
ORAL LECTURE 6 - Isabela Alves de Albuquerque Bessa (UFF) - Mesoporous silica/hydroxyapatite nanocomposites: a biocompatible material for cancer treatment
Invited Speaker: Prof. Andrew S. Paluch
Title: Predicting the Distribution of Drug-like Solutes Between Octanol and Water
YouTube
CompChem2021 - Day 3 - Session 2 (ORAL LECTURES and Prof. Andrew S. Paluch)
Schedule:
14:00 - 14:30
ORAL LECTURE 4 - Karine Nascimento de Andrade (UFF) - Hydrolysis of alkyl halides: the influence of water solvation models on the SNX mechanism
14:30 - 15:00
ORAL LECTURE 5 - Dayenny Louise D'Amato (UFF) - Gold nanoparticles immunoassay…
14:00 - 14:30
ORAL LECTURE 4 - Karine Nascimento de Andrade (UFF) - Hydrolysis of alkyl halides: the influence of water solvation models on the SNX mechanism
14:30 - 15:00
ORAL LECTURE 5 - Dayenny Louise D'Amato (UFF) - Gold nanoparticles immunoassay…
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Quantum double-slit experiment done with molecules for the first time | Research | Chemistry World
https://www.chemistryworld.com/news/quantum-double-slit-experiment-done-with-molecules-for-the-first-time/4014819.article
https://www.chemistryworld.com/news/quantum-double-slit-experiment-done-with-molecules-for-the-first-time/4014819.article
Chemistry World
Deuterium molecules in superposition act as slits for classic quantum experiment
Researchers prepare 'new type of matter' to conduct classic wave-particle duality experiment
Newly improved quantum algorithm performs full configuration interaction calculations without controlled time evolutions
https://phys.org/news/2021-11-newly-quantum-algorithm-full-configuration.html
https://phys.org/news/2021-11-newly-quantum-algorithm-full-configuration.html
phys.org
Newly improved quantum algorithm performs full configuration interaction calculations without controlled time evolutions
In a continuing effort to improve upon previous work, a research team at the Graduate School of Science, Osaka City University, has applied its recently developed Bayesian phase difference estimation ...
How about running MD simulations using the computational power of Google Colab for free?
Yes, it is possible: https://pablo-arantes.github.io/making-it-rain/
Yes, it is possible: https://pablo-arantes.github.io/making-it-rain/
making-it-rain
Making it rain
Cloud-based molecular simulations for everyone
Online journal club about the paper "Making it Rain: Cloud-Based Molecular Simulations for Everyone" from Pablo Arantes (https://pubs.acs.org/doi/abs/10.1021/acs.jcim.1c00998) via zoom next Wednesday 1 Dec 22:30 (Spain time), where Pablo Arantes will ask questions from interested readers. If you want to join go to BIO-HPC discord server: https://discord.gg/fZyNYTsT7k, #journalclub
ACS Publications
Making it Rain: Cloud-Based Molecular Simulations for Everyone
We present a user-friendly front-end for running molecular dynamics (MD) simulations using the OpenMM toolkit on the Google Colab framework. Our goals are (1) to highlight the usage of a cloud-computing scheme for educational purposes for a hands-on approach…
MolCalc - The Molecule Calculator
The molecule calculator is a small web-based interface for doing small-scale quantum chemistry calculation with the intent of giving chemical intuition to students, from high-school to university. Hosted at http://molcalc.org
The molecule calculator is a small web-based interface for doing small-scale quantum chemistry calculation with the intent of giving chemical intuition to students, from high-school to university. Hosted at http://molcalc.org
A unique quantum-mechanical interaction between electrons and topological defects in layered materials
https://phys.org/news/2021-11-unique-quantum-mechanical-interaction-electrons-topological.html
https://phys.org/news/2021-11-unique-quantum-mechanical-interaction-electrons-topological.html
phys.org
A unique quantum-mechanical interaction between electrons and topological defects in layered materials
An international team led by EPFL scientists, has unveiled a unique quantum-mechanical interaction between electrons and topological defects in layered materials that has only been observed in engineered ...
Molecule’s electronic structure is simulated on a quantum computer – Physics World
https://physicsworld.com/a/molecules-electronic-structure-is-simulated-on-a-quantum-computer/
https://physicsworld.com/a/molecules-electronic-structure-is-simulated-on-a-quantum-computer/
Physics World
Molecule’s electronic structure is simulated on a quantum computer
Hartree-Fock calculations done on Google’s Sycamore machine
Physics-informed deep learning to assess carbon dioxide storage sites
https://phys.org/news/2021-12-physics-informed-deep-carbon-dioxide-storage.html
https://phys.org/news/2021-12-physics-informed-deep-carbon-dioxide-storage.html
phys.org
Physics-informed deep learning to assess carbon dioxide storage sites
Pumping carbon dioxide underground may help combat the warming of the atmosphere but finding appropriate underground sites that could safely serve as reservoirs can be complicated.
MOPAC2016 is now open access
So you don't have to request a license anymore: just download and use.
http://openmopac.net/Download_MOPAC_Executable_Step2.html
So you don't have to request a license anymore: just download and use.
http://openmopac.net/Download_MOPAC_Executable_Step2.html
Metal Complexes by M J Clarke et al.pdf
9.4 MB
MOLECULAR ORBITALS OF TRANSITION METAL COMPLEXES
Yves Jean, Colin Marsden
Yves Jean, Colin Marsden
karton_spackman_2021_evaluation_of_density_functional_theory_for.pdf
1.2 MB
Evaluation of density functional theory for a large and diverse set of organic and inorganic equilibrium structures
Severe bug in ORCA 5.0.1
All users are advised to update to 5.0.2 and check previous results using ORCA 5.0.1
This ORCA release is especially relevant as it fixes a race-condition in a combination of shared matrices and parallel linear algebra, leading to unreliable results and undefined run-time behaviour the more cores have been used.
Due to this bug, all users are thoroughly encouraged to upgrade their ORCA version to 5.0.2 immediately!
All users are advised to update to 5.0.2 and check previous results using ORCA 5.0.1
This ORCA release is especially relevant as it fixes a race-condition in a combination of shared matrices and parallel linear algebra, leading to unreliable results and undefined run-time behaviour the more cores have been used.
Due to this bug, all users are thoroughly encouraged to upgrade their ORCA version to 5.0.2 immediately!
UCSF ChimeraX version 1.3 has been released!
ChimeraX includes user documentation and is free for noncommercial use.
Download for Windows, Linux, and MacOS from:
https://www.rbvi.ucsf.edu/chimerax/download.html
Updates since version 1.2 (May 2021) include:
- AlphaFold tool and command to get AI-predicted protein structures
- Selection Inspector to inspect/change attributes of atoms, bonds, etc.
- Scale Bar tool and command
- new BLAST Protein GUI with easier controls for showing hit info such as
source species, crystallographic resolution, ligands in structure
- Altloc Explorer tool and command to switch among alternate locations
- model loops and missing segments with Modeller
- combine or copy models
- change bond lengths
- apply command files iteratively to multiple input files
- list multiple map-fitting solutions from global search
ChimeraX includes user documentation and is free for noncommercial use.
Download for Windows, Linux, and MacOS from:
https://www.rbvi.ucsf.edu/chimerax/download.html
Updates since version 1.2 (May 2021) include:
- AlphaFold tool and command to get AI-predicted protein structures
- Selection Inspector to inspect/change attributes of atoms, bonds, etc.
- Scale Bar tool and command
- new BLAST Protein GUI with easier controls for showing hit info such as
source species, crystallographic resolution, ligands in structure
- Altloc Explorer tool and command to switch among alternate locations
- model loops and missing segments with Modeller
- combine or copy models
- change bond lengths
- apply command files iteratively to multiple input files
- list multiple map-fitting solutions from global search
Computational Chemistry_ Applications and New Technologies.pdf
148.8 MB
Computational Chemistry_ Applications and New Technologies
Quantum Mechanics and Machine Learning Used To Accurately Predict Chemical Reactions at High Temperatures
https://scitechdaily.com/quantum-mechanics-and-machine-learning-used-to-accurately-predict-chemical-reactions-at-high-temperatures/
https://scitechdaily.com/quantum-mechanics-and-machine-learning-used-to-accurately-predict-chemical-reactions-at-high-temperatures/
SciTechDaily
Quantum Mechanics and Machine Learning Used To Accurately Predict Chemical Reactions at High Temperatures
Method combines quantum mechanics with machine learning to accurately predict oxide reactions at high temperatures when no experimental data is available; could be used to design clean carbon-neutral processes for steel production and metal recycling. Extracting…
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Dear participants - here are the ZOOM links for the 7th ORCA user meeting:
Day 1 - 15th of December :
Dec 15, 2021 02:00 PM Amsterdam, Berlin, Rome, Stockholm, Vienna
Please click the link below to join the webinar:
https://us02web.zoom.us/j/84620722628?p ... JOYzgzZz09
Passcode: 662124
Or One tap mobile :
US: +16699006833,,84620722628#,,,,*662124# or +19294362866,,84620722628#,,,,*662124#
Or Telephone:
Dial(for higher quality, dial a number based on your current location):
US: +1 669 900 6833 or +1 929 436 2866 or +1 253 215 8782 or +1 301 715 8592 or +1 312 626 6799 or +1 346 248 7799
Webinar ID: 846 2072 2628
Passcode: 662124
International numbers available: https://us02web.zoom.us/u/kpRBMqTXA
Day 1 - 15th of December :
Dec 15, 2021 02:00 PM Amsterdam, Berlin, Rome, Stockholm, Vienna
Please click the link below to join the webinar:
https://us02web.zoom.us/j/84620722628?p ... JOYzgzZz09
Passcode: 662124
Or One tap mobile :
US: +16699006833,,84620722628#,,,,*662124# or +19294362866,,84620722628#,,,,*662124#
Or Telephone:
Dial(for higher quality, dial a number based on your current location):
US: +1 669 900 6833 or +1 929 436 2866 or +1 253 215 8782 or +1 301 715 8592 or +1 312 626 6799 or +1 346 248 7799
Webinar ID: 846 2072 2628
Passcode: 662124
International numbers available: https://us02web.zoom.us/u/kpRBMqTXA
Zoom Video
Join our Cloud HD Video Meeting
Zoom is the leader in modern enterprise video communications, with an easy, reliable cloud platform for video and audio conferencing, chat, and webinars across mobile, desktop, and room systems. Zoom Rooms is the original software-based conference room solution…