Computational and Quantum Chemistry – Telegram
Computational and Quantum Chemistry
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A group dedicated to everything about theoretical and computational/quantum chemistry.
Please, write in English only. Keep on-topic. Be respectful always.
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LIVE! Starting in 30 min: https://www.youtube.com/watch?v=bEb9PSuJQLU

ORAL LECTURE 4 - Karine Nascimento de Andrade (UFF) - Hydrolysis of alkyl halides: the influence of water solvation models on the SNX mechanism

ORAL LECTURE 5 - Dayenny Louise D'Amato (UFF) - Gold nanoparticles immunoassay for the fast detection of SARS-CoV-2 spike protein by Dynamic Light Scattering

ORAL LECTURE 6 - Isabela Alves de Albuquerque Bessa (UFF) - Mesoporous silica/hydroxyapatite nanocomposites: a biocompatible material for cancer treatment

Invited Speaker: Prof. Andrew S. Paluch
Title: Predicting the Distribution of Drug-like Solutes Between Octanol and Water
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How about running MD simulations using the computational power of Google Colab for free?
Yes, it is possible: https://pablo-arantes.github.io/making-it-rain/
MolCalc - The Molecule Calculator
The molecule calculator is a small web-based interface for doing small-scale quantum chemistry calculation with the intent of giving chemical intuition to students, from high-school to university. Hosted at http://molcalc.org
MOPAC2016 is now open access
So you don't have to request a license anymore: just download and use.
http://openmopac.net/Download_MOPAC_Executable_Step2.html
Metal Complexes by M J Clarke et al.pdf
9.4 MB
MOLECULAR ORBITALS OF TRANSITION METAL COMPLEXES
Yves Jean, Colin Marsden
karton_spackman_2021_evaluation_of_density_functional_theory_for.pdf
1.2 MB
Evaluation of density functional theory for a large and diverse set of organic and inorganic equilibrium structures
Severe bug in ORCA 5.0.1
All users are advised to update to 5.0.2 and check previous results using ORCA 5.0.1

This ORCA release is especially relevant as it fixes a race-condition in a combination of shared matrices and parallel linear algebra, leading to unreliable results and undefined run-time behaviour the more cores have been used.
Due to this bug, all users are thoroughly encouraged to upgrade their ORCA version to 5.0.2 immediately!
UCSF ChimeraX version 1.3 has been released!

ChimeraX includes user documentation and is free for noncommercial use.
Download for Windows, Linux, and MacOS from:

https://www.rbvi.ucsf.edu/chimerax/download.html

Updates since version 1.2 (May 2021) include:

- AlphaFold tool and command to get AI-predicted protein structures
- Selection Inspector to inspect/change attributes of atoms, bonds, etc.
- Scale Bar tool and command
- new BLAST Protein GUI with easier controls for showing hit info such as
source species, crystallographic resolution, ligands in structure
- Altloc Explorer tool and command to switch among alternate locations
- model loops and missing segments with Modeller
- combine or copy models
- change bond lengths
- apply command files iteratively to multiple input files
- list multiple map-fitting solutions from global search
Dear participants - here are the ZOOM links for the 7th ORCA user meeting:

Day 1 - 15th of December :

Dec 15, 2021 02:00 PM Amsterdam, Berlin, Rome, Stockholm, Vienna

Please click the link below to join the webinar:
https://us02web.zoom.us/j/84620722628?p ... JOYzgzZz09
Passcode: 662124

Or One tap mobile :
US: +16699006833,,84620722628#,,,,*662124# or +19294362866,,84620722628#,,,,*662124#
Or Telephone:
Dial(for higher quality, dial a number based on your current location):
US: +1 669 900 6833 or +1 929 436 2866 or +1 253 215 8782 or +1 301 715 8592 or +1 312 626 6799 or +1 346 248 7799
Webinar ID: 846 2072 2628
Passcode: 662124
International numbers available: https://us02web.zoom.us/u/kpRBMqTXA
7th ORCA USER MEETING PROGRAMME

* 14.45 Welcome, Frank Neese

* 15.00-15.30 Phosphorus X-ray emission spectroscopy probes non-covalent interactions of phosphate biomolecule, Z. Mathe
Chair: B. Helmich-Paris

* 15.40 - 16.00 What types of chemical problems benefit from density-corrected DFT? A probe using an extensive and chemically diverse test suite, G. Santra
* 16.00 - 16.20 Multiple scenarios where Orca Software and DFT calculation could help a on-computational chemist, F. Movilla

* 16.20 - 16.40 - cancelled -
* 16.40 - 17.00 A theoreticians view on molecular properties, V. A. Tran

* 17.10 - 17.40 A Combined Spectroscopic and Computational Study on the Mechanism of Iron-catalyzed Aminofunctionalization of Olefins, I. Harden
Chair: A. Papadopoulos

* 17.50 - 18.10 Vibrational frequency calculations and FTIR spectroscopy yield insight into oxygen activation by a copper monooxygenase enzyme, K. W. Rush

* 18.10 - 18.30 Paramagnetic NMR and bioinorganic chemistry at the Quantum level, L. Gigli

* 18.40-19.10 Charge Separation in Oxygenic Photosynthesis: The Role of Protein Electrostatics, A. Sirohiwal
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ORCA Users' meeting Day 2, 16th of December :

Dec 16, 2021 02:00 PM Amsterdam, Berlin, Rome, Stockholm, Vienna

Please click the link below to join the webinar:
https://us02web.zoom.us/j/84888004154?p ... 9BK0tyUT09
Passcode: 866009
Or One tap mobile :
US: +16699006833,,84888004154#,,,,*866009# or +19294362866,,84888004154#,,,,*866009#
Or Telephone:
Dial(for higher quality, dial a number based on your current location):
US: +1 669 900 6833 or +1 929 436 2866 or +1 253 215 8782 or +1 301 715 8592 or +1 312 626 6799 or +1 346 248 7799
Webinar ID: 848 8800 4154
Passcode: 866009
International numbers available: https://us02web.zoom.us/u/kcp9UIII5B
Day 2 16.12.2021

* 15.00-15.30 ORCA goes Industry: some recent applications at Bayer, division Crop Science, M. E. Beck, D. Yepes Tejada
Chair: E. Schiavo

* 15.40-16.00 Ab-initio methods for solids, A. Dittmer

* 16.00-16.20 Crystal structure refinement with charge density from ORCA 5.0 calculation using NoSphereA2 in OLEX2 1.5, M. Patzer

* 16.20-16.40 Important role of open metal sites in adsorption of various molecules in Basolite F300 and Basolite C300 metal-organic frameworks, I. Mikulska

* 16.40-17.00 Infrared Sequence Alignment Enables Stereochemical Assignment of Complex Natural Products, F. Pultar
Chair: A. Auer

* 17.30-17.50 Co(II) Single Ion Magnets with imino-pyrrolyl ligands: Analysis and Design strategies. N. A. G. Bandeira

* 17.50-18.10 Applications of conventional configuration interaction techniques to antiferromagnetically coupled systems: the case of iron-sulfur clusters, A. Kubas

* 18.10-18.30 Apical ligand effects on the electronic structure of Co(III) corroles, N. I. Neuman * 18.30-18.50 Zero-field splitting in an Ni4 complex: Multiconfigurational and relativistic calculations with up to four active nickel(II) sites, R. Maurice

* 19.00 Concluding remarks, ORCA developer team